Indexes

You're going to have to create a .htaccess file in your public_html/ directory containing:
Code:
Options -Indexes
Then, in public_html/pub/, create a new .htaccess:
Code:
Options +Indexes
This will force Options -Indexes inherited to all sub-directories of public_html/ save for public_html/pub/.
 
Upcoming version 1.21 will allow you to see them. Might be a way around this in the current version though.

For now you can login to FTP and remove the .htaccess file.
 
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