I've modified my original statement since it was wrong and misleading. There is more of a problem with the SSL/IP combo than there is with IPv6.
1. You do get a server that can accept connections from the IPv6 network on all ports, offering all services (except DA).
The same server will offer the same services on the IPv4 network, but with less IPs. Domains can have both types so a customer can connect to http via IPv4, but his mobile is retrieving his emails via IPv6.
2. Custombuild should be updated to support IPv6. I guess if enough people ask for it, it will happen
. I think only ProFTPd and Exim need to be modified. Regarding the configs, if you don't intend on fully supporting SSL, it should work out of the box.
I think JBMC Software has only 3 things to do:
update DA itself
update custombuild
make sure the multi-IP system works
support SSL configuration on all services
#2 is easy, #3 is almost there, no idea about #1 and I doubt #4 will happen.
So all in all, there not that far.
I'm using a dual-stack system myself and it works quite well.